Ancient population · Chalcolithic

Honshu Early Jomon (Chalcolithic, Japan)

Name: Honshu Early Jomon (Chalcolithic, Japan) (Japan_Honshu_EarlyJomon)
Creator: Genoplot

Japan_Honshu_EarlyJomon

Honshu Early Jomon (Chalcolithic, Japan) is an ancient population in Genoplot's G25 reference catalogue (Japan_Honshu_EarlyJomon), with 5 samples from Japan, dated to c. 4270–3580 BCE.

Among ancient populations it sits closest to Jomon (Hunter-Gatherer, Japan), Honshu Mid Late Jomon (Bronze Age, Japan) and Jomon (Neolithic, Japan) · JPN_Jomon; the nearest living populations are Aeta, Agta and Japanese.

Its men carry Y-DNA haplogroup D1a (3); its mtDNA haplogroups include M7a (3) and N9b (2).

Period: Chalcolithic
Date: c. 4270–3580 BCE
Country: Japan
Sampled near: Odake Shell Midden 36.30, 136.49
Sites: Odake Shell Midden (4)
Funagura Shell Midden
Samples: 5
Published in: CookeNakagomeSciAdv2021
Catalogue: Japan_Honshu_EarlyJomon.SG variant

Nearest populations

Distance between population averages in scaled G25 space, ×100. Lower is closer. It says who resembles this population, not who descends from it; an nMonte model tests that.

Ancient
#	Population	Distance
1	Jomon (Hunter-Gatherer, Japan)`Japan_HG_Jomon`	1.51
2	Honshu Mid Late Jomon (Bronze Age, Japan)`Japan_Honshu_MidLateJomon`	1.51
3	Jomon (Neolithic, Japan) · JPN_Jomon`JPN_Jomon`	1.82
4	Jomon (Neolithic, Japan) · Japan_Jomon`Japan_Jomon`	1.88
5	Nagabaka (Iron Age, c. 2800 BP, Japan)`Japan_Nagabaka_2800BP`	2.09
6	Shikoku Initial Jomon (Neolithic, Japan)`Japan_Shikoku_InitialJomon`	2.10
7	Shikoku Late Jomon (Bronze Age, Japan)`Japan_Shikoku_LateJomon`	2.65
8	Yokchido (Bronze Age, Korea)`Korea_Yokchido`	4.75
9	Sakhalin (Hunter-Gatherer)`Sakhalin_HG`	10.06
10	Changhang (Neolithic, Korea)`Korea_Changhang`	12.47

Modern
#	Population	Distance
1	Aeta`Aeta`	15.85
2	Agta`Agta`	15.85
3	Japanese`Japanese`	16.70
4	Dungan`Dungan`	16.96
5	Nepali Tamang Simigaon`Nepali_Tamang_Simigaon`	17.14
6	Dongxiang`Dongxiang`	17.28
7	Salar`Salar`	17.33
8	Magar`Magar`	17.37
9	Batak`Batak`	17.53
10	Kusunda`Kusunda`	17.54

Haplogroups

Y-DNA

3 men with a call

D1a2a1 D-Z1574 2
D1a2a1c1a1 D-Z1561

mtDNA

5 individuals with a call

Individuals 5

The samples behind this population in the catalogue. Sex, date, site and haplogroups are from the Allen Ancient DNA Resource; Y-DNA calls are mostly automatic, from the shown terminal SNP.

Sample	Sex	Date	Site	Y-DNA	mtDNA
`JpFu1.SG`	F	3640-3528 calBCE	Funagura Shell Midden		M7a1
`JpOd181.SG`	M	3967-3801 calBCE	Odake Shell Midden	D1a2a1c1a1 D-Z1561	N9b1
`JpOd274.SG`	M	4339-4169 calBCE	Odake Shell Midden	D1a2a1 D-Z1574	M7a
`JpOd282.SG`	M	3952-3787 calBCE	Odake Shell Midden	D1a2a1 D-Y11739	M7a1
`JpOd6.SG`	F	4229-3984 calBCE	Odake Shell Midden		N9b3