Ancient population · Neolithic

Jomon (Hunter-Gatherer, Japan)

Name: Jomon (Hunter-Gatherer, Japan) (Japan_HG_Jomon)
Creator: Genoplot

Japan_HG_Jomon

Jomon (Hunter-Gatherer, Japan) is an ancient population in Genoplot's G25 reference catalogue (Japan_HG_Jomon), with 3 samples from Japan, dated to c. 2400–910 BCE.

Among ancient populations it sits closest to Honshu Early Jomon (Chalcolithic, Japan), Honshu Mid Late Jomon (Bronze Age, Japan) and Jomon (Neolithic, Japan) · JPN_Jomon; the nearest living populations are Aeta, Agta and Japanese.

Its men carry Y-DNA haplogroup D1a (2); its mtDNA haplogroup is N9b (3).

Period: Neolithic
Date: c. 2400–910 BCE
Country: Japan
Sampled near: Rokutsu Shell Mound 35.55, 140.16
Samples: 3
Published in: WangReichNature2021
Catalogue: Japan_HG_Jomon

Nearest populations

Distance between population averages in scaled G25 space, ×100. Lower is closer. It says who resembles this population, not who descends from it; an nMonte model tests that.

Ancient
#	Population	Distance
1	Honshu Early Jomon (Chalcolithic, Japan)`Japan_Honshu_EarlyJomon`	1.51
2	Honshu Mid Late Jomon (Bronze Age, Japan)`Japan_Honshu_MidLateJomon`	1.89
3	Jomon (Neolithic, Japan) · JPN_Jomon`JPN_Jomon`	1.96
4	Jomon (Neolithic, Japan) · Japan_Jomon`Japan_Jomon`	2.16
5	Nagabaka (Iron Age, c. 2800 BP, Japan)`Japan_Nagabaka_2800BP`	2.16
6	Shikoku Initial Jomon (Neolithic, Japan)`Japan_Shikoku_InitialJomon`	2.35
7	Shikoku Late Jomon (Bronze Age, Japan)`Japan_Shikoku_LateJomon`	2.71
8	Yokchido (Bronze Age, Korea)`Korea_Yokchido`	4.06
9	Sakhalin (Hunter-Gatherer)`Sakhalin_HG`	9.66
10	Changhang (Neolithic, Korea)`Korea_Changhang`	12.27

Modern
#	Population	Distance
1	Aeta`Aeta`	16.10
2	Agta`Agta`	16.14
3	Japanese`Japanese`	16.47
4	Nepali Tamang Simigaon`Nepali_Tamang_Simigaon`	16.64
5	Dungan`Dungan`	16.70
6	Magar`Magar`	16.88
7	Kusunda`Kusunda`	17.00
8	Dongxiang`Dongxiang`	17.01
9	Salar`Salar`	17.06
10	Tamang`Tamang`	17.10

Haplogroups

Y-DNA

2 men with a call

D1a2a1 D-Y11739 2

mtDNA

3 individuals with a call

Individuals 5

The samples behind this population in the catalogue. Outliers are kept out of the population's average. Sex, date, site and haplogroups are from the Allen Ancient DNA Resource; Y-DNA calls are mostly automatic, from the shown terminal SNP.

Sample	Sex	Date	Site	Y-DNA	mtDNA
`I13883`	M	984-835 calBCE	Rokutsu Shell Mound	D1a2a1 D-Y11739	N9b2a
`I13884`	F	2472-2300 calBCE	Rokutsu Shell Mound		N9b
`I13886`	M	2137-1981 calBCE	Rokutsu Shell Mound	D1a2a1 D-Z1574	N9b1
`I13882` outlier	F	1386-1212 calBCE	Rokutsu Shell Mound		N9b
`I13885` outlier	F	1382-1134 calBCE	Rokutsu Shell Mound		N9b